29.6.25

Code Graph Model (CGM): A Graph-Integrated LLM that Tackles Repository-Level Software Tasks without Agents

 

From Functions to Full Repositories

Recent LLMs excel at function-level generation, yet falter when a task spans an entire codebase. To close that gap, researchers from Tsinghua University, Shanghai Jiao Tong University and Shanghai AI Lab introduce Code Graph Model (CGM)—a graph-integrated large language model that reasons over whole repositories without relying on tool-calling agents. 

How CGM Works

ComponentPurpose
Graph Encoder–AdapterExtracts control-flow, call-graph and dependency edges from every file, converting them into node embeddings.
Graph-Aware AttentionBlends token context with structural edges so the model “sees” long-range relationships across files.
Staged Training1) text-only warm-up on permissive code; 2) graph-enhanced fine-tuning on 20 K curated repos; 3) instruction tuning for tasks like bug repair and doc generation.

The result is a 72-billion-parameter Mixture-of-Experts checkpoint (CodeFuse-CGM-72B) plus a lighter 13 B variant, both released under Apache 2.0 on Hugging Face. 

Benchmark Highlights

Task (RepoBench)GPT-4o (agent)DeepSeek-R1CGM-72B
Bug Fix (pass@1)62.3 %55.8 %64.7 %
Refactor-Large58.1 %48.9 %61.4 %
Doc Generation71.5 %66.2 %72.1 %

CGM matches or beats proprietary agent stacks while running single-shot—no tool chaining, no external memory. 

Why It Matters

  • Agent-Free Reliability – Removes the non-determinism and overhead of multi-call agent frameworks.

  • Whole-Project Context – Graph attention lets the model track cross-file types, imports and call chains.

  • Self-Hosted Friendly – Open weights mean enterprises can audit and finetune without data-privacy worries.

Limitations & Roadmap

The authors note performance drops on repos exceeding 50 K lines; future work targets hierarchical graphs and sparse attention to scale further. They also plan IDE plug-ins that stream live graph embeddings to CGM for interactive code assistance. 


Takeaway
Code Graph Model shows that marrying graph structure with LLMs can unlock repository-scale intelligence—providing a transparent, open alternative to closed-source agent pipelines for everyday software engineering.

Paper: https://huggingface.co/papers/2505.16901

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